PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G35540.1
Common NameARF14, F15O4.37
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 605aa    MW: 68618.2 Da    PI: 6.9408
Description auxin response factor 14
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G35540.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.69.6e-23126227199
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f kvlt sd++ +g +++pkk+a e+     ++++  ++++   d++g++W++++iyr++ +r++lt GW+ F  +++L egD++vF   + +++el+
  AT1G35540.1 126 FTKVLTASDTSVHGGFSVPKKHAIEClppldMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAFTTSKKLVEGDVIVFV--RGETGELR 221
                  89****************************9666667789************************************************..449999** PP

                  EEEE-S CS
           B3  94 vkvfrk 99 
                  v+++r+
  AT1G35540.1 222 VGIRRA 227
                  ***996 PP

2Auxin_resp94.61.5e-31252331183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a ha++++++F vvY+Pr+  s+F+v+++k+++ +++k+ vG+Rf m+fe++d+serr  Gt++gvsd++p +W+ S+WrsL+
  AT1G35540.1 252 AKHAFDNQCMFIVVYKPRS--SQFIVSYDKFLDVVNNKFNVGSRFTMRFEGDDFSERRSFGTIIGVSDFSP-HWKCSEWRSLE 331
                  6899**************6..9*************************************************.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-36117238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-30123248IPR015300DNA-binding pseudobarrel domain
CDDcd100175.59E-21125226No hitNo description
PROSITE profilePS5086313.07126228IPR003340B3 DNA binding domain
PfamPF023624.5E-20126227IPR003340B3 DNA binding domain
SMARTSM010198.0E-22126228IPR003340B3 DNA binding domain
PfamPF065078.3E-27252330IPR010525Auxin response factor
PfamPF023091.2E-6504546IPR033389AUX/IAA domain
SuperFamilySSF542776.08E-9507586No hitNo description
PROSITE profilePS5174523.3510602IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MESGNVVNTQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVEAS  60
TREELNELQP ICDFPSKLQC RVIAIQLKVE NNSDETYAEI TLMPDTTQVV IPTQNQNQFR  120
PLVNSFTKVL TASDTSVHGG FSVPKKHAIE CLPPLDMSQP LPTQEILAID LHGNQWRFRH  180
IYRGTAQRHL LTIGWNAFTT SKKLVEGDVI VFVRGETGEL RVGIRRAGHQ QGNIPSSIVS  240
IESMRHGIIA SAKHAFDNQC MFIVVYKPRS SQFIVSYDKF LDVVNNKFNV GSRFTMRFEG  300
DDFSERRSFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF PRPNQVSPWD IEHLTPWSNV  360
SRSSFLKNKR SREVNEIGSS SSHLLPPTLT QGQEIGQQSM ATPMNISLRY RDITEDAMTP  420
SRLLMSYPVQ PMAKLNYNNV VTPIEENITT NAVASFRLFG VSLATPSVIK DPVEQIGLEI  480
SRLTQEKKFG QSQILRSPTE IQSKQFSSTR TCTKVQMQGV TIGRAVDLSV LNGYDQLILE  540
LEKLFDLKGQ LQARNQWEIA FTNNEEDKML VGEDPWPEFC NMVKKIFIYS KEEVKNLKSR  600
KSLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1202435819359Auxin response factor 1
4ldw_A1e-1202435819359Auxin response factor 1
4ldw_B1e-1202435819359Auxin response factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183997350.0
Genevisible261163_x_at0.0
Expression AtlasAT1G35540-
AtGenExpressAT1G35540-
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G35540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9LQE8
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G35540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6697960.0AY669796.1 Arabidopsis thaliana clone C105354 ARF22 (At1g34390) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174786.10.0auxin response factor 14
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLC0SUZ10.0C0SUZ1_ARATH; Auxin response factor (Fragment)
STRINGAT1G35540.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12276731
Representative plantOGRP5261578
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Hagen G,Guilfoyle T
    Auxin-responsive gene expression: genes, promoters and regulatory factors.
    Plant Mol. Biol., 2002 Jun-Jul. 49(3-4): p. 373-85
    [PMID:12036261]
  3. Cluis CP,Mouchel CF,Hardtke CS
    The Arabidopsis transcription factor HY5 integrates light and hormone signaling pathways.
    Plant J., 2004. 38(2): p. 332-47
    [PMID:15078335]
  4. Remington DL,Vision TJ,Guilfoyle TJ,Reed JW
    Contrasting modes of diversification in the Aux/IAA and ARF gene families.
    Plant Physiol., 2004. 135(3): p. 1738-52
    [PMID:15247399]
  5. Okushima Y, et al.
    Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.
    Plant Cell, 2005. 17(2): p. 444-63
    [PMID:15659631]
  6. Hoen DR, et al.
    Transposon-mediated expansion and diversification of a family of ULP-like genes.
    Mol. Biol. Evol., 2006. 23(6): p. 1254-68
    [PMID:16581939]
  7. Axtell MJ,Snyder JA,Bartel DP
    Common functions for diverse small RNAs of land plants.
    Plant Cell, 2007. 19(6): p. 1750-69
    [PMID:17601824]
  8. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  9. Ikeda M,Ohme-Takagi M
    A novel group of transcriptional repressors in Arabidopsis.
    Plant Cell Physiol., 2009. 50(5): p. 970-5
    [PMID:19324928]
  10. Varaud E, et al.
    AUXIN RESPONSE FACTOR8 regulates Arabidopsis petal growth by interacting with the bHLH transcription factor BIGPETALp.
    Plant Cell, 2011. 23(3): p. 973-83
    [PMID:21421811]
  11. Vernoux T, et al.
    The auxin signalling network translates dynamic input into robust patterning at the shoot apex.
    Mol. Syst. Biol., 2011. 7: p. 508
    [PMID:21734647]
  12. Wang J,Yan DW,Yuan TT,Gao X,Lu YT
    A gain-of-function mutation in IAA8 alters Arabidopsis floral organ development by change of jasmonic acid level.
    Plant Mol. Biol., 2013. 82(1-2): p. 71-83
    [PMID:23483289]